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On Wed 14 January 2014, the Museum welcomed a guest speaker to present a special science seminar. Richard Pyle of Bishop Museum, Honolulu, Hawaii, spoke about:

 

...the number of species on planet Earth that remain unknown to science exceeds (perhaps vastly) the number of species that have so far been discovered, let alone formally documented... Within the global biodiversity library, we are at this point in human history like toddlers running through the halls of the Library of Congress, largely unaware of the true value of the information that surrounds us... Taxonomists are the librarians, developing new tools to build the card catalog for the Greatest Library on Earth... What we accomplish within the next twenty years will impact the quality of life for humans over the next twenty thousand years.

 

Richard is an ichthyologist exploring extreme deep reef habitats, a bioinformatician and an ICZN Commissioner, a SCUBA re-breather engineer and and a two-time, two-topic TED Speaker. Watch the film of Rich's fascinating talk in the Museum's Flett Theatre:

 

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A team of Museum scientists and volunteers visited Slapton Ley Nature Reserve between 21-25 July to sample invertebrates from a variety of habitats. Rachel Clark writes about their final day in the field.


25 July 2014

 

Today was the last day of sampling and we all loved it! Unfortunately Sara had to leave today, so we took the final photograph of us all together before we set off for sampling.

 

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All of us looking a little more tanned than when we arrived. Front row (left to right): Jan, Ryan, Fez, Georgie and Sara. Back row (left to right): Rachel, Thomas, George, Miranda and Beau.

 

Every evening this week we've been preparing the specimens we collected back at the field centre, and it's fiddly work!

 

The new age of deoxyribonucleic acid (DNA)

 

Some of the specimens collected during our fieldwork are destined for the Museum’s new Molecular Collections Facility (MRF), where they will be stored in liquid nitrogen at −150 °C to form a collection that can be used by scientists worldwide who want to study the DNA and other cellular contents of the species in question.

 

Over three evenings, after our lovely cooked meal served by Shaun from the FSC, two groups of four carefully collected tissue samples from freshly killed specimens.

 

The sample tissue (often the legs) were put into special small plastic vials then placed into liquid nitrogen vapour in a dry shipper, which freezes and preserves them.

 

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Left: the small vials which contain tissue samples. Right: a dry shipper with nitrogen vapour inside.

 

In total we spent 49.5 person-hours over three days preparing the samples from 220 specimens, each sample taking on average 14 minutes to process. We tried to ensure that we only collected a maximum of two of each species - all being larger invertebrates (flies, grasshoppers, wasps, spiders etc).

 

Our last site!

 

While some enjoyed sweeping, pootering and collecting butterflies, two of us (Miranda and I) went in search for a new site on the lake to put down yellow pan traps. We ended up on the edge of Slapton village - a four-mile round trip!

 

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The large, miles-long Slapton Ley!

 

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The beautiful walkway created by the FSC, which runs through the swamp fen in the south grounds of the Nature Reserve.

 

We did get some amazing views and got to sample right in the middle of Slapton’s Swamp Fen, which is something we would not have achieved! The photograph above shows just how big the Ley is: miles!

 

Our last Supper


In the evening we headed off to our last dinner together before we packed up to head home. This was held in the main FSC centre in Slapton.

We would like to say a massive thank you for the staff that looked after our stomachs during our time in Slapton, and particularly Shaun who was there every day serving us breakfast and dinner!

 

Thank you for reading - I hope you have enjoyed our blogging!

Rachel

 

Goodbye beautiful Slapton!

 

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The sun setting over Devon, from the field across from our base, Start Bay Centre.

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A team of Museum scientists and volunteers visited Slapton Ley Nature Reserve between 21-25 July to sample invertebrates from a variety of habitats. Rachel Clark writes about their second day in the field, including the range of traps they use to collect insects.


For the last two nights we have been putting out Ryan’s light trap. The trap runs all night and collects invertebrates such as moths, flies, beetles and wasps, which are especially attracted to the bright light - with a high ultraviolet component it is much more powerful than a household light bulb.

 

You can pooter specimens from around the trap while it is on, but you can also leave the insects in the trap overnight and take a look in the morning.

 

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Ryan and Thomas looking at what is flying around the light trap.

 

During our moth-trapping we collected a range of species, including Poplar and elephant hawk-moths, rosy footman, buff-tip, common footman, drinker moth and magpie moth... to name a few.

 

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Left to right; buff-tip, rosy footman and poplar hawk-moth which were found in the light trap.

 

We also used a method known as sweeping, which as the name suggests is sweeping a net in a figure-of-eight through vegetation. The net catches the invertebrates and they can then be pootered out of the net bag.

 

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Left: Jan teaching us how to use a sweep net. Right: Jan demonstrating how to pooter/aspirate effectively.

 

Jan provided an excellent demonstration for all of us on our first day of sampling; we are all now brilliant at sweeping in a figure-of-eight!

 

Later on some of us went to great lengths to collect some samples, including taking a paddle in the lake, which contains leeches!

 

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Left: some adventurous collectors searching the reeds for specimens. Right: a mass of leeches found under a rock (as well as on our skin).

 

With that I will leave you with a beautiful scenic picture from the Ley!

Thank you for reading.

Rachel

 

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Taken at the lake as the day draws in.

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A team of Museum scientists and volunteers visited Slapton Ley Nature Reserve between 21-25 July to sample invertebrates from a variety of habitats. Volunteer Rachel Clark reports back on their first day in the field.

 

Our first day of fieldwork mainly focused on a range of microhabitats in Slapton Woods, which is a short 10 minute walk from our base camp (Start Bay Centre).

 

Slapton Woods is ancient woodland located on the edge of Slapton Ley Nature Reserve, inland from the lake and the sea. The woodland has been around so long that is it is mentioned in the Domesday Book. Before the Field Studies Council (FSC) started to maintain the woodland (which they do only for public safety), it was largely unmanaged.

 

img1.jpgAnd so our first day of collecting started, deep in the amazing ancient woodland of Slapton Woods.

 

Now personally at this moment I felt like I was walking in the footsteps of great biologists such as Alfred Russel Wallace, Charles Darwin, and Henry Walter Bates... there are so many! I was so excited I could have danced through the woods. Raring to go with my backpack, pooter (that’s a suction device) and net, I caught up with everyone and we began to sample.

 

Working with creepy crawlies of the soil


Now this is an area which I know a lot more about, the sampling of invertebrates in the leaf litter and soil. Before we had a chance to get our bearings in the woods, Miranda, Georgie, Beau and myself got to work on some rotting logs.

 

img2.jpgBeau searching under some rotting logs for some good specimens for us to collect.

 

We were looking for groups like isopods (woodlice) and myriapods (centipedes and millipedes). This is done by opening up the rotting wood to expose the species which have burrowed into the wood.

 

It's all about the unknown - Malaise traps and yellow pan traps


So today, after a good few years sorting Malaise trap specimens in the Museum’s Soil Biodiversity lab, I finally got to see how Malaise traps work, which for me was really useful, as it means I can understand how the specimens were collected. 

 

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Thomas putting the final peg in the Malaise trap, a device that captures winged insects.

 

Malaise traps collect species of insects which fly such as Diptera (flies) and Hymenoptera (bees and wasps). They work by allowing the insects to fly under a tented area. They hit the netting that runs down the middle of the trap and then fall to the floor or hang on the netting. All winged insects after falling to the floor want to fly or climb upwards The Malaise trap directs them up towards the highest point where there is a funnel leading into to a pot containing ethanol – which quickly kills them.

 

We will be keeping our Malaise traps up until Thursday evening, when we will take them down and hopefully have an amazing bounty which will take very many hours to sort to order (Diptera, Hymenoptera etc).

 

What we did after we finished sampling for the day

 

After all the excitement and seriousness of sampling in the heat all day, we all have to find a way to relax and unwind… my personal favourite for celebrating a first successful day of sampling is to jump into the sea… fully clothed!

 

img4.jpgGoing, going, gone! Running in to the clear beautiful sea at Slapton Beach… yes, fully clothed!

 

img5.jpgGeorgie enjoying the entertainment and me having a relaxing moment floating in the warm sea.

 

Moth traps and sweep net collecting in the next blog piece, so stay tuned.

 

Thanks for reading!

Rachel

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A team of Museum scientists and volunteers are in Slapton Ley Nature Reserve this week to sample invertebrates from a variety of habitats. Volunteer Rachel Clark reports back on their first day and plans for the week ahead.

 

Day one - the road to Slapton


An early start was made by all ten of us today to arrive at the Museum nice and early. Before 10am it's still a place buzzing with activity as scientists work and front-of-house and retail staff prepare for some of the 4 million people who come through our doors into the Museum.

 

Soon enough we were leaving London behind and heading off for the sunny coasts of Devon and our field site.

 

All about Slapton Ley Nature Reserve


Slapton Ley Nature Reserve is in Devon, near Dartmouth in the South West of England. The reserve is an area of biodiversity importance as it is a designated SSSI (Site of Special Scientific Interest) with a rich coastal heritage. The lake in the nature reserve is separated from the sea by a thin band of land, with a lovely beach too!

 

With this in mind and the recent headlines during the winter, sampling places like Slapton Ley Nature Reserve is more important than ever as sooner rather than later the environment will be claimed by the sea.

 

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A view of the Slapton Ley Nature Reserve to the right showing the size of the lake and the surrounding woodland and cliffs (some of which we will survey this week), and the gorgeous blue sea to the left.


Slapton Ley Nature Reserve has been studied well by scientists in certain areas such as bats and birds, but the invertebrates in the area are under-recorded. Jan Beccaloni found this out earlier in the year and believed it was time to do something about it!

 

Why and what we're sampling

 

We are sampling for collections enhancement and to provide species records to the Fields Studies Council (FSC). The habitats we will be sampling are a range of natural and semi-natural habitats, including woodland, cliffs, grassland, open water and banks.

 

The invertebrates we are collecting include:

  • Arachnids (spiders and their relatives)
  • Hymenoptera (ants, bees and wasps)
  • Lepidoptera (butterflies and moths)
  • Diptera (flies)
  • Orthoptera (grasshoppers and crickets)
  • Isopoda (woodlice)
  • Myriapods (millipedes and centipedes)

 

Now the serious explaining is over, time for the fun of the adventure! 

 

The long journey


First I must say a big thank you to Jan Beccaloni for driving us down to Slapton, Thomas our Hymenoptera specialist for driving down the bags and equipment in his amazing 40-year-old Land Rover, and last but not least Georgie for directing us.  

 

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Georgie navigating while enjoying a ride in a classic Land Rover.

 

I personally tried to use the time to catch up on some podcasts on my iPhone which are over a year old, including one on Alfred Russel Wallace and the Birds of Paradise... I fell asleep twice! It was a 8 hour drive, though we all had a brilliant laugh in the mini bus throughout the day and got to know each other.

 

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The bright and breezy (at a petrol station!). Left to right: Beau, Fevziye (Fez), Sara, Thomas, Ryan, Jan, Georgie, George, Miranda and Rachel).

 

We passed one famous landmark, Stonehenge, very slowly which gave everyone a chance to take photos and we also passed some impressive fields with what looked to be hundreds of bales waiting to be taken into storage. We finally arrived in Slapton at our base camp of Start Bay FSC Centre at 19:00 (ish) hours with a lovely meal waiting for us ready prepared by the amazing staff at Slapton.

 

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A busy Stonehenge on a sunny summers day, it wasn’t only busy there... it was busy on the road running past!

 

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The mass of hay bales we encountered on our travels.

 

Some of us (myself included) were so eager to start collecting we set up a moth trap before heading off to bed. Well, that was the plan, some of us stayed up until gone past midnight looking at our catch. We plan to set it up tomorrow night and will write about it in a following post.

 

Hope you have enjoyed the excitement of our long journey! Bigger and better things to come!

 

Thank you for reading

Rachel 

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After filling our water tanks and having breakfast, the Halton left Bergen harbor for our first diving site in Vatlestraumen on Sunday morning.

 

Leaving Bergen.JPGLeaving Bergen on Sunday morning.

 

This location is of interest to the bryozoan team because a species list was done in the area by Professor John Ryland (University of Swansea) back in the late 1950s. After dive checks are completed the bryozoan team jumps in.

 

checks_before_dive.JPGHamish supervising dive checks with Piotr.

 

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Joanne, Piotr and Sally about to dive.

 

As the Halton circles, waiting for the divers the return to the surface, the Norwegian coastguard arrives and asks us to move from the area as the police are undertaking a missing persons search. With bryozoans and rocks on board, the days dive plan is hastily revised and we head for Åskenset, a short steam away.

 

The horse mussel team, which consists of Dr William (Bill) Sanderson, Prof Hamish Mair and Rebecca Grieves from Heriot Watt University, are looking for maerl (coralline red algae) and horse mussel beds as part of their biogenic reef project.

 

mussel team.JPGBill and Rebecca waiting to dive while Hamish supervises.

 

After half an hour down, the divers come to the surface – it has proved unsuccessful and we move on. After a 2 hour steam through some narrow fjordic passages, we arrive in Herdlefjorden at a site commonly known as the Shark Wall. This vertical wall is unusual due to the shoals of tope (a small shark species), which congregate in these waters.

 

Piotr ready to go.JPGPiotr clutching his camera about to go down to the Shark Wall.

 

This would finish off the day’s underwater activities before the Halton started to steam north through wonderful Nordic scenery. Several hours later, we moor up overnight. The work for the day has not finished, however, as microscopes come out and Mary and Joanne review the days samples.

 

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Bryozoans on rocks from Vatlestraumen.

 

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Bryozoan zooids seen down the microscope.

 

More diving in the coming days. Check back for more soon!

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Saturday brought another sunny day in Bergen. During the morning, all the luggage and equipment had to be transferred from the hotel to the boat. Amazingly we got everything, including the buckets and ourselves, into a large taxi for the short journey to the quay where the MV Halton was moored.

 

The luggage-blog.JPGJoanne and Sally with the luggage outside the hotel.

 

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The MV Halton at the quayside in Bergen.

 

After loading, Mary, Joanne and Sally went through the Bergen Fish Market to catch a bus bound for the cable car up to Mount Ulriken. The market sells everything from live crustaceans, such as king crabs through to cavier and dried fish.

 

Fish stall-blog.JPGFish stall in Bergen Fish Market.

 

King crabs-blog.JPGKing crabs for sale.

 

The bus dropped us off at the cable car where we found ourselves in the middle of a wedding party, who were heading up the mountain for the wedding ceremony! At the top, we got great views out across Bergen, looking down towards our first proposed sampling area for the next day, Vatlestruamen.

 

View from Mount Ulriken-blog.JPGView from Mount Ulriken.

 

By the time we returned to the Halton, the rest of the expedition party had arrived, including the eminent Norwegian underwater photographer, Erling Svensen.

 

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Loading the gas tanks onto the Halton.

 

The evening was spent settling in, loading, arranging and checking all the equipment for the following day, and listening to the sounds of Iron Maiden drifting across the water from their open air concert in the city!

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As part of the background research for our expedition to the Norwegian Fjords and prior to joining the research cruise, Mary and I paid a visit to the University Museum of Bergen. The aim was to investigate bryozoan specimens collected from deep water around the coastline of Norway during the recent MAREANO project surveys.

 

The Bergen museum was actually founded in 1825 - they moved to the current building in 1866, and it is divided into two departments. These encompass Natural History Collections and the Cultural History Collections. There are also public events and exhibitions. The museum is situated within the grounds of a former Botanical gardens.

 

Bergen Museum.jpgRenovations underway at the University Museum of Bergen.

 

The building is currently being renovated, so in order to view the holdings of the bryozoan material, we were hosted by curator Jon Anders Kongsrud, and taken to University of Bergen Marine Biological Station by the waterfront at Espeland. The lab is situated in a lovely bay, and it was great weather with sunshine and blue skies, paradise for a marine bryozoologist .


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Enjoying the sunshine at Espeland Marine Biological Station.

 

We spent an industrious morning at the microscopes, viewing the MAREANO material collected in 2009. Among the samples were specimens collected from deep water stations around 2,000m, and we were able to identify some interesting species.

 

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Identification under way in the lab at Espeland.


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    Samples from the MAREANO collection.


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A species of Bicellarina from the MAREANO collection.

 

This was an excellent opportunity to meet some of the staff and to enjoy the Norwegian hospitality. After lunch we were introduced to Emeritus Professor Brattegard, who has been compiling a checklist of the Norwegian bryozoan fauna, which he shared with us. His long experience in studying the distribution patterns of Norwegian marine life meant that he could also suggest some interesting locations for us to go and survey.

 

Following the visit, the last task of preparation for the day was to transport the consignment of sampling buckets from the marine station to the hotel in Bergen.

 

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Mary manouvreing our bryozoan sampling buckets.

 

Tomorrow we will be joining the diving vessel MV Halton at the Bryggen waterfront in Bergen, ready to load on board all the equipment and supplies needed for the survey. We will need a large taxi to transport all our dive gear and equipment from the hotel!

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This week, I and 11 other marine scientists will be heading off to the Norwegian fjords to look at the effects of climate change on marine life. This includes four members associated with the Museum who investigate bryozoans (also known as sea mats or moss animals).

 

We are aiming to photograph and collect samples of current marine Bryozoa to assess changes in the species composition of the Norwegian fauna in comparison with historical surveys from circa 1900-1920 and 1963 in the Bergen and Trondheim areas. The collections will be done by SCUBA diving in the cold clear waters of the Norwegian fjords.

 

We are investigating to see if the species biodiversity has changed in response to increases in sea water temperature. The team will also be surveying artifical structures to look at patterns of distribution of non-native and invasive bryozoan species in north European waters.

 

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A colony of the bryozoan, Cellaria sinuosa growing on a rocky wall.


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An electron microscope image showing the colony units.

 

The bryozoan research team consists of four members:

 

  • Mary Spencer Jones: Bryozoa and Entoprocta curator at the Museum
  • Dr Joanne Porter: Scientific Associate at the Museum/Heriot-Watt University Associate Professor
  • Sally Rouse: Heriot-Watt/Scottish Association of Marine Sciences PhD student and former Natural History Museum Encyclopedia of Life Rubenstein Fellow
  • Dr Piotr Kuklinski: Scientific Associate at the Museum/Institute of Oceanology Poland Associate Professor

 

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The bryozoan research team: Mary Spencer Jones, Dr Joanne Porter, Sally Rouse and Dr Piotr Kuklinski.


The expedition kicks off on Saturday 28 June when the team join the research vessel MV Halton in Bergen and get all the equipment loaded on board. Joanne and I are making a visit to the bryozoan collection held at the Bergen Museum of Natural History prior to joining the cruise. Just time for a bit of final last minute packing before we head off on Thursday morning!

 

For more information on bryozoans, have a look at the Bryozoa of the British Isles Scratchpad website.

 

Mary Spencer Jones

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Artist Chrystel Lebas and Museum biologist and botanist Kath Castillo are exploring the E J Salisbury collection at the Natural History Museum and Kew Gardens Archives. They hope to use Salisbury’s images of Scottish landscapes to reconstruct environmental change over the last 50 years.

 

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Article in the New Scientist 11 June 1959, Courtesy of the Royal Botanic Gardens Kew Library & Archives.

 

Chrystel and Kath began looking for clues that could reveal more about Salisbury’s research on ecology and botany through his methods of recording data, his travel journals and field notes. Delving into the 30 boxes of Salisbury’s documents has also revealed a small collection of hand written quotations, puns and limericks.

 

The Salisbury archive at Kew Gardens is currently in the condition in which it was received and will be fully conserved when resources allow.

 

img2.jpgMuseum biologist and botanist Kath Castillo and Artist Chrystel Lebas, researching the E J Salisbury collection at Kew Gardens. Photograph by Bergit Arends, project curator.


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One of the notebooks found in Kew Library & Archives reveals a wealth of information including experimental data and research annotations on ecology. Courtesy of the Royal Botany Gardens Kew Library & Archives.

 

Funding from the Calouste Gulbenkian Foundation permitted Kath Castillo to join Chrystel on her research in Scotland. Kath, who joined the project in September 2013, provides the necessary scientific knowledge (botanical and ecological) that enables geographical and botanical determinations in the field, based on Salisbury’s recorded images in the same locations.

img4.jpgKath and Chrystel on fieldwork in Scotland, October 2013 (Photographs by Bergit Arends).

 

Kath and Chrystel began the research and comparative study in Rothiemurchus Estate, a privately owned Highland estate within the Strathspey, northeast of the river Spey, in theCairngorms National Park.

 

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Kath and Chrystel comparing and searching for Salisbury’s locations from his landscape images in Rothiemurchus Estate. Photograph by Bergit Arends.

 

The project engages with environmental change, particularly in the Scottish landscape, and creates new understandings of the artistic and scientific gaze onto the natural environment and its representation. The project is supported by a grant from the Calouste Gulbenkian Foundationand the University of the Arts London.

 

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Kath holding one of E J Salisbury’s photographs against the Rothiemurchus landscape. Photograph by Bergit Arends.


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Above left: Kath identifying a specimen. Right: Chrystel photographing ‘Vaccinium vitis-idaea on remains of pine bole in Rothiemurchus forest’. Bottom: Chrystel recording a view of the fens at twilight.


The Salisbury collection has, until recently, remained un-catalogued and undervalued. A collaborative approach to these materials is important as the plates represent an important piece of landscape and wildlife photographic history – UK natural history and photographic history knowledge and expertise will be essential to unlock the arts and science potential of this collection.

 

The images represent a unique record of landscapes that may have changed dramatically. They are an irreplaceable piece of the scientific information that may be used to investigate environmental change, either through natural processes or the hand of man.

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Photographer and filmmaker Chrystel Lebas is working on a collaborative project to observe environmental change in the British landscape using the the Sir Edward James Salisbury Archive.

 

image-1.jpgChrystel photographed by Kath Castillo (Museum biologist and botanist) on their first research trip together in Culbin Forest in October 2013.

 

The Museum holds a beguiling collection of unexplored landscape images and field notes taken by British botanist and ecologist Sir Edward James Salisbury, who was Director of Kew Gardens from 1943 to 1956. The collection of over 1,400 works was orphaned – an anonymous assembly of Kodak boxes containing silver gelatine prints and photographic glass plates kept in two large cardboard boxes. The images record natural environments, capturing in particular botanical information in the United Kingdom and Ireland, to which specific annotations on the regions’ ecology were added.

 

Around two years ago photographer and filmmaker Chrystel Lebas was introduced to the collection by Bergit Arends (former Curator of Contempory Art at the Natural History Museum). Chrystel Lebas and Museum botanist Mark Spencer (Curator of the British and Irish Herbarium), began to trace this important collection, which was assembled in the first third of the 20th century.

 

image-2.jpgThe images include close-ups of plants and sometimes a foot appearing in the corner of the frame, presumably to indicate the scale of the specimen, or sometimes a subject, a woman standing amongst the forest trees.

 

Each of the boxes containing glass plates were scrutinised to look for clues that could indicate the author’s name or any information that could relocate the collection. And finally one day, and after a couple of months researching the collection, Chrystel found a glass plate negative with a handwritten name on it: E.J Salisbury, and of course this was the moment that made us realise that this particular collection was extremely valuable!

 

image-3.jpg‘Edward James Salisbury: Prophet and propagandist of botany’ New Scientist, 11 June 1959.

 

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Chrystel began travelling to Scotland on her own, prior to the research being funded by the Calouste Gulbenkian Foundation. She started her research in the field and recorded the landscapes.

 

The focus of this project is on the Scottish landscape through Salisbury’s images taken between 1925 to 1933 in the following areas:

  • Arrochar in Argyll and Bute
  • the Trossachs National park
  • the Rothiemurchus Estate, a privately owned Highland Estate within the Strathspey, northeast of the river Spey, in the Cairngorms National Park
  • Culbin Forest, which sits on the Moray Firth between Nairn and Findhorn

 

The research contributes to a comparative landscape and botanical study spanning nearly 90 years.

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by Hayley Dunning, Science Web Editor

 

A species of nightshade  thought to be restricted to one area of Peru has been found in 17 other  locations with the aid of habitat modelling.

 

Museum botanists Dr Tiina Särkinen (now at the Royal Botanic Garden Edinburgh) and Dr Sandra Knapp discovered the new species of nightshade, named this week as Solanum pseudoamericanum,  in 2012 in the Andes. When they first found it, they thought this  species only occurred in two river valleys in southern Peru. By using a  method known as species distribution modelling, they predicted other  regions of Peru where the plant might also be found, based on the  environmental conditions at the original collection sites.

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An example of the newly discovered Solanum pseudoamericanum, collected on 7 March 2012.

The flowers are on the left and the berries on the right.

 

A  collecting field trip to northern Peru the following year uncovered the  nightshade in 17 new locations predicted by the model. The success of  the project proves the method of species distribution modelling can work  in complex climatic regions such as the Andes, where there is an  abundance of undiscovered species and data coverage is generally poor.

 

Mapping species


Species  distribution modelling uses climatic data to help map the range of a  new species, speeding up the process of cataloguing it worldwide and  providing a way to accurately predict where that species might be found  again.

 

The approach may be particularly useful when dealing with critically endangered species, where there is an urgent need to find and conserve remaining populations.

The work is part of a larger project to map the distribution patterns of all the endemic Solanaceae species in Peru, and to look for components of rarity; what sorts of  things make plant species rare. With this information, researchers hope  to be able to better describe, and then conserve, plant diversity in  Peru.

 

Hidden diversity


Species  distribution modelling has been used successfully for vertebrates  before, but has not been widely tested in plants. Dr Knapp belives this  may be because collecting plants is seen as reasonably straightforward,  but this case study suggests that it is not always true.

 

Solanum pseudoamericanum was not originally collected because it looks a lot like a common weed.  ‘Collecting is extremely biased, and this raises the question of how we  deal with absences,’ Knapp said. The new species represents a category  of ‘hidden diversity’, where new discoveries can be obscured by their  physical similarity to known, common species.

 

Open data


The research, and all its associated geographical and specimen data, is published this week in the open-access journal PhytoKeys.  By publishing the results and original specimens as open data, said  Knapp, large specimen datasets can be combined by other researchers  globally to produce more general analyses of diversity.

 

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Before I tell you about our time in the lab, I thought I would share with you another video taken by Paul Pearce Kelly in Cuc-Phuong. The video below is of a predatory slug species from the genus Atopos. These slugs either eat small microsnails whole or bore through larger snails' shells using their toothed, tongue-like radula.

 

 

 

After our exciting and productive time in Cuc Phuong National Park we headed back to Hanoi to process the material for frozen tissue collections. Our expedition has been jointly funded by the Natural History Museum and the Frozen Ark, and one of our aims is to collect frozen tissue material and viable cells.

 

The Frozen Ark was set up in 1996 and is run by a consortium of 22 universities, museums, zoos and aquaria from 8 different countries, with the aim to conserve frozen cells containing DNA from endangered animals before they go extinct. Since many limestone habitats are under threat from the construction industry (the limestone is used in the manufacture of cement and other building materials), we decided that terrestrial molluscs would be a great addition to the Frozen Ark collections.

 

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Chris preparing tissue whilst Jackie puts the samples on ice.

 

The specimens used for these processess have been brought back from Cuc-Phuong live, to be processed in the laboratory. For the frozen tissue samples, small slices of the foot of the snail (the part it moves on) are placed in sterile tubes and frozen at -80 degrees Celsius. These samples will hopefully yield high quality DNA. Five multiple sets are stored for our current research, long term Museum storage, the Frozen Ark in London, the Frozen Ark in Nottingham and for the Frozen Ark in Vietnam.

 

The viable cell preparations are also taken from tissue samples but they are mashed up in an antibiotic solution (to prevent damage by bacteria etc.), and then mixed with a buffer chemical so that as the tissues are frozen, again at -80 degres Celcius, the cells will not fracture and will remain whole. It is hoped that future technology will allow us to use these cells and the genetic content within to re-create and re-introduce extinct species.

 

lab.JPG(L-R) Jackie, Chris and Fred hard at work on the cold-chain-gang (sorry terrible molecular joke).

 

The two experts in our group helping us with these processes are Jackie Mackenzie-Dodds and Dr. Chris Wade, who are both on the advisory board of the Frozen Ark. Jackie is the collections manager of the molecular and frozen tissue collections at the Museum, and Chris is a lecturer of genetics and a molecular biologist at Nottingham University. I'm glad they are both here as the frozen tissue preparations are complex and intricate and I have never done anything like this before.

 

We have spent the last few days collecting in Huu Lien Nature Reserve and tomorrow will be our last day collecting in the field so in my next blog I'll be telling you all about the strange and wonderful things we have found, and a little about our last few days in Hanoi.

 

Fruit for Thought

 

As well as the delicious savoury dishes we have been sampling a wealth of unusual (at least to me) fruit. My favourite has to be the Rambutan, a egg-sized red fruit covered in green hairs. I'm afraid I don't have any pictures because I ate them all before I thought to take a photo so you'll have to Google them. They taste a bit like a grape but are sweeter and juicier - delicious.

 

fruit.JPGPersimmon (the red fruit) and Guava's (the green ones) with a little lotus tea - what a lovely afternoon treat.

 

We've also been eating ...

 

Pomelo - a sharp citrus fruit with a grapefruit-like taste

Guava - like a tropical quince

Persimmon - a bit like across bewteen a plum and a tomato, much nicer than it sounds

Longans - like large lychees but sweeter

Forest Bananas - shorter but wider than our usual bananas, tastes earthier and banana-ery if that makes any sense

Jicama - a tuber that tastes like apple and is often served with savoury courses

 

Bite Me

 

0 Leech bites ... all though I have a funny feeling this may change tomorrow as it is due to be a stormy evening

12 mosquito bites

Ant bites, fading and almost gone

1

We've been amazed by the amount and diversity of snail species in Cuc Phuong. We knew it was rich but we have found so many new and exciting species that we are struggling to process all the material (a good problem to have). The weather has improved slightly (good for us) but the ground and leaf litter is still really damp for collecting (good for the snails, everyone wins!).

 

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Limestone outcrops in Cuc Phuong National Park, the perfect habitat for a snail hunt.

 

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Megaustenia sp. is a semi-slug, see how the body (also called the mantle) almost completely covers the shell.

 

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I can't wait to get back to the Museum to try and identify this large, keeled Camaenid.

 

 

Paul Pearce Kelly, the Senior Curator of Invertebrates and Lower Vertebrates at London Zoo, is joining us on field work for the first time. His aim (apart from helping us to collect snails) is to build up links with different groups in Vietnam to help conserve and study threatened species.

 

After finding some thought-to-be-extinct snails on our Vietnam trip in 2012, we hope that Paul, in conjunction with the Vietnam National Museum of Nature, will be able to set up a breeding programme to protect them against threats in future. As well as helping us collect, Paul took some great videos of animals alive in the field and he has kindly let me share them with you in my blog. In this one you can see the as yet unidentified  'looping snail':

 

 

 

The as yet unidentified 'looping snail'. See how only a small portion of the foot is in contact with the rock at any one time.

 

Another member of our group I'd like to introduce to you to is Jonathan Fenn, a biology placement student from Manchester University. Jonathan has been working with Fred and I for the past year on producing an illustrated guide of the slugs and snails of Northern Vietnam, as well as a species list with distribution data for terrestrial molluscs across the whole of Vietnam. The aim of the trip is to teach Jonathan more about fieldwork, collecting and preserving snails, and to gain experience in preserving viable cells (which I will discuss in my next blog).

 

sang-paul-jonathan.jpgSang van Pham and Paul Pearce Kelly (left) in the national park, and Jonathan Fenn in collecting mode.

 

As well as snails, the forests and local areas are home to an amazing array of different animals. One of my favourites (not including the enormous spider that lives in my toilet, didn't think you would want a picture of that) was the praying mantis species I found outside my bedroom (see below). Sadly I missed the Vine Snake (Ahaetulla sp.) that my co-workers found when searching the trees for snails.

 

Praying mantis.

"What you lookin' at?"

 

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So gutted I missed this Vine Snake (Ahaetulla sp.), what a beauty!

 

Since we'd all been working so hard we decided we deserved a visit to the Endangered Primate Rescue Center (EPRC) in Cuc Phuong National Park. The centre was established in 1993 and is dedicated to the rehabilitation, breeding and research of endangered primates as well as the protection of their habitats. The EPRC is home to over 150 primates from 15 Vietnamese species, including lorises, langurs and gibbons. My favourites were the wonderfully playful Gray Shanked Douc Langurs.


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Grey Shanked Douc Langur family (Pygathrix cinerea), a critically endangered species endemic to Vietnam.


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Some of the team with Liam Shepheard (centre in Green T-shirt), one of the head animal keepers at the Endangered Primate Rescue Center.

 

Our guide for the afternoon was Liam Shepheard, head animal keeper, who showed us the remarkable centre and told us about the amazing work they do in rescuing and when possible re-introducing animals back in to the wild. One species of Laotian Langur (Trachypithecus laotum) named 'Airport' is the only individual of its kind in captivity and is thought to be critically endangered in the wild. At times the stories were a sad and sobering experience but the success they are having is remarkable and it was real treat to be able to see these beautiful creatures up close.

 

Carnivore and Pangolin Rescue Center

 

After meeting the directors of Cuc Phong National Park over dinner the previous evening, we were invited to visit the Carnivore and Pangolin Rescue Center, a massive privilege as this is not normally open to the public. Many mammal species are being hunted for meat, the pet trade and in the case of the Pangolin, for Chinese medicine (the scales are used in medicines and the meat is regarded as a, ahem, male performance enhancer). The centre was set up to rescue illegally found animals and to develop techniques and procedures to allow the rehabilitation, breeding and reintroduction of such species back in to the wild.

 

We visited the centre at night, which is the best time to see the majority of the animals. Pangolins are my favourite mammal and I have never seen one before so this was a real highlight for me. The animal we met was called 'Lucky', a Sunda Pangolin who had been saved from captivity but who was sadly too tame to be re-introduced.

 

A Binturong.

The Binturong (Arctictis binturong) - the cutest thing I have ever seen. Numbers have dropped due to hunting.

 

Sunda Pangolin.

A Sunda Pangolin (Manis javanica) rescued from an illegal trader but sadly too tame to be released.

 

I also got to see another favourite of mine, the Binturong, a south-east Asian mammal related to civets whose numbers have been declining in the region due to threats from poachers.

 

A Few Thoughts from my Stomach

 

We have had some delicious and some challenging food in the last few days. Fried mixed mushrooms and chilli roasted chicken have been superb, whereas mixed offal and pak choi soup was something I am keen to avoid in the future (and I like offal). But today I thought I would tell you a bit about some of the mealtime extras I have enjoyed.

 

Nước chấm is the name of a group of dipping sauces that are commonly served with meals that have a fish sauce base, often mixed with garlic, bird's eye chillis, garlic and sugar, with the precise mixture depending on the region. This sauce is, I think, delicious with morning glory and .. well, actually pretty much anything although a few of our group find it a bit overpowering (I would take some home but it is prohibited by most airlines as if it leaks it tends to smell forever!)

 

At the behest of our Vietnamese colleagues of course, we like to round the day off with a glass or two of Mountain Apple Brandy. The precise ingredients of this sour but delicious beverage are a closely guarded secret, and it is homemade by the wife of our driver, Mr. Kiem. I have however managed to find out that it contains a sour apple-like fruit, rice wine, mixed berries and a selection of herbs and bark. Whatever it is I'm sold!

 

Bite Count

0 Leech Bites (I cannot tell you how happy this makes me)

8 Mosquito Bites (in total, 5 new ones)

More Ant bites than a man should ever have to deal with! Itchy does not even come close.

0

We arrived in Cuc Phuong National Park on Friday afternoon. Set up in 1962, the park is the oldest in Vietnam and covers an area of over 22,200 ha. It is home to more than 2,000 species of trees, 110 species of reptiles and amphibians, 308 species of bird and 125 species of mammal, including the Clouded Leopard, Delacour's Langur, Owston's Civet and the Asian Black Bear.

 

Since the national park is so rich in snail diversity we could barely wait to start collecting and bagged our first few specimens as we excitedly stepped out of our van. After a hearty meal (more later) and a good night's sleep under our mosquito nets we were ready to head out into the field. Our first collecting site was a limestone outcrop, which also contains an archaeological cave where human tools and remains dating to over 7,500 years ago have been recovered.

 

Chasing Snails

 

Collecting snails is harder than it sounds, as we have to make sure we get specimens that live in soil and leaf litter, on the rocks and stones, in the trees and on vegetation. In the hot and humid conditions of the tropics this is difficult and sweaty work, but at least when we do find them they aren't too hard to catch.

instructer Frd.jpgFred Naggs (R) gives Hao Luongvan (L), Mr Kiem, our driver (C), and myself a quick Iecture.

 

On our first day we found an amazing variety of specimens, from microsnails less than 1mm tall that hide in the crevices of the limestone rock face, to larger and often strikingly coloured species. One of my favouites was the white form of Camaena gabriellae (pictured below left) which we found crawling on the bark of trees and managed to catch by knocking them with a stick in to a traditional conical Vietnamese hat, which did the job perfectly.

 

I am also particularly fond of the elongate group of snails called the Clausiliidae (pictured below right), which are found on limestone in large numbers, their bodies barely peaking beyond the shells as they graze on lichens and algae.

 

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Species found on day one include Camaena gabriellae (L) and Tropidauchenia sp. from the Clausillidae (R).

 

Today I would like to introduce you to another Vietnamese member of our team, Mr Hao Luongvan (pictured in first image). Hao works for the Forestry Commision and is based in Hoang Lien National Park, Sapa in northen Vietnam. He has been studying molluscs for the last ten years.

 

We first met Hao on our visit to Cuc Phuong in 2007 and have worked closely with him ever since. Not only does he a have an encyclopaedic knowledge of the variety of habitats, plants and animals across Vietnam, but he has been instrumental in helping us gain access to different national parks and make vital links with important government and conservation departments.

 

Turtle Power

 

After a hard day's work we managed to fit in a visit to the Cuc Phuong Turtle Sanctuary. The centre was set up in 1998 as a safe area to house and breed the 19 native species of Vietnames turtles (of which 3 are found in Cuc Phuong), as well as to increase public awareness of the threats poaching poses to these amazing creatures.

 

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Terrapin in Cuc Phuong Sanctuary. Poaching is the main source of their decline.

 

The centre was really inspiring, as to date over 900 turtles have been born there from animals confiscated from illegal traders. Plus we got to sit on a life-size model of the Yangtze giant softshell turtle (Rafetus swingoei), which can reach over a metre in length.

 

Specimen Sorting, Identification and Preservation

 

After our brief foray in to the world of chelonians it was time to get back to work. The first job is to sort all the snails into species based on shell and body shape, colour and sculpture (sculpture means the 3D surface - is it ridged, smooth or bumpy etc.). Once we have done this we choose one specimen to take a tissue sample from, and preserve this in 100% ethanol for molecular analysis.

 

snail-sorting.jpgSorting snails in the sunshine, it's a hard life ... honest.

 

We then split the remainder of the individuals into those to be preserved in 80% ethanol for anatomical analysis and those to be taken back to Hanoi alive for viable cell preservation (more on this in a future blog post). This is my favourite part of the collecting day as we get to compare what we have found and there is always something unusual or unexpected - this time we had both aplenty! On our first haul we could not believe the diversity and volume of species we managed to collect - this really is an amazing habitat for molluscs and even more exciting than usual as we think in our first day we not only have a new species or two but possibly even a new genus .... so watch this space.

 

Food For Thought

 

After a long but fruitful day it was time to retire for dinner and no blog post of mine would be complete without some mention of food. Tonight was the first time on this trip that I got to have some of my favourite Vietnamese food; a green vegetable called Morning Glory (rau muống in Vietnamese or Ipomoea aquatica in science speak). The spinach-like stems and leaves are fried in garlic and chilli and are bitter but wonderfully moreish. I ate more than I should have with fried chicken, sesame roasted pork and sumptuous sticky rice washed down with locally made Vietnamese brandy (don't ask!).

 

DSC_1016_small.JPGMorning Glory (Ipomoea aquatica) the green stuff on the left ... much nicer than it looks!

 

As I write this (in the courtyard of our accomodation with toads barking and cicadas chirping) I have just finished sorting out Sunday's specimen haul, also an impressive bounty, and I will be reporting back shortly on some new and exciting discoveries along with some of our further adventures in Cuc Phuong.

 

Biting animals update

 

As of Sunday evening (our time) I have;

0 leech bites

3 Mosquito Bites

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