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Curator of Micropalaeontology's Blog

5 Posts tagged with the ostracods tag
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Some of the Museum's most important ostracod specimens were re-examined recently using synchrotron technology. The results published in the journal Science showed that these very delicate but exquisitely preserved fossils gave evidence for reproduction using giant sperm back in the Cretaceous period about 100 million years ago.

 

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A scanning electron microscope of an exceptionally preserved ostracod from Brazil showing details of unusually preserved soft body parts.

 

From images obtained by scanning electron microscope we have known since the 1970s that the Cretaceous ostracod Harbinia micropapillosa was almost identical in body form to modern day examples. Usually ostracods, microscopic crustaceans that inhabit aquatic environments, leave only their calcareous shells in the fossil record. However, these exceptional fossils from Brazil include details of their organic soft body parts not normally fossilised.

 

These specimens were first found by legendary evolutionary biologist Dr Colin Patterson while he was studying the fossil fish from the same rock formation. He passed them to Dr Ray Bate who published them under the name Pattersoncypris. However, some ostracod workers now believe that they should be classified under the name Harbinia which was first described by a Chinese worker in 1959 and therefore takes naming priority.

 

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The European Synchrotron Research Facility (ESRF) at Grenoble in France.

 

In 2007 we had a request by Dr Renate Matzke-Karasz (University of Munich) and a group of co-workers to take our specimens to Grenoble in France to have them analysed in the synchrotron beam ID19. A synchrotron is a giant ring where electrons are accelerated to great speeds and then bent into a circular path by magnets. Strong magents are used which cause the electron beam to deviate and at this point a very bright, intense synchrotron x-ray is emitted. Sometimes synchrotrons are referred to as diamond light sources as a result. These very intense synchrotron x-rays are then focussed into a beam which can be used for analysis at a sub micrometer scale ideal for our microfossils.

 

Some types of modern day ostracods are well known for their use of giant sperm in reproduction. Dr Matzke-Karasz and her co-workers were interested to see if our fossil specimens (Robin Smith thesis collection) contained any evidence for giant sperm or the organs responsible for its production and storage. As the curator of the specimens it was my job to transport them safely to Grenoble and to handle them while they were being analysed. I also took part in the analysis which went on all day and all night for two days. Fortunately we did get some sleep as there were four of us. We took it in turns with two of us analysing the fossils and two analysing the comparative modern specimens in 6 hour shifts.

 

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Positioning the specimen so that it is aligned with the beam. (Don't worry about the scary red lines. The beam was only switched on when we were all safely out of the room!).

 

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Dr Radka Symonova (then at Charles University, Czech Republic), Renate, Dr Paul Tafforeau (ESRF) and Dr Robin Smith (Lake Biwa Museum, Japan) examining some early scans in our experimental cabin home for the two days.

 

The specimens were placed in the beam and then rotated 180 degrees while 1500 x-ray cross sections were taken at regular intervals. These x-ray images were then combined together using specially designed software to produce 3-dimensional images (Holotomographic reconstructions). Although we could immediately see evidence for important internal structures while we were analysing the specimens, a lot of work was still required to produce the final results. The slices that make these 3-dimensional images were analysed for internal structures by Renate and her team back in Germany. Artificial colours were painstakingly added to each slice by hand to show these structures more clearly.

 

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One of the x-ray cross sections of a fossil specimen before it was combined into a 3-dimensional image.

 

The results clearly showed differences between males and females. The males had distinctive tubes in the position where modern day ostracods have  a sperm pump called a Zenker's Organ. The females had inflated sacks in the position where modern day ostracods have sperm receptacles. These are only inflated once they have been impregnated with giant sperm. Our results had shown that this reproductive strategy had been in place more than 100 million years ago.

 

 

Video of a female specimen of Harbinia micropapillosa. The orange sacks are the sperm receptacles.

 

So why is this important? As I showed in the dinosaur exhibition blog item, it is vital to know how organisms reproduce so that you can correctly interpret their fossil record and distribution in modern day environments. Ostracods are often restricted to particular environments and can be useful indicators of changes in climate. This particular ostracod species is common in Cretaceous non-marine sediments offshore Brazil and is therefore of interest to oil exploration companies as a marker for key rock formations.

 

Reproduction with giant sperm is not just restricted to the ostracods as other organisms including fruit flies and some types of frog also use this strategy. The evolutionary significance and history of this type of reproductive strategy is still unclear. What is certain is that specimens in the Museum collections show that this was also happening over 100 million years ago!

 

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Some acrylic palm of the hand sized scale models produced from the 3-D synchrotron scans and used at the "Science Uncovered" event.

 

 

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I have lost track of the number of times I have explained to people what I do and they have replied that they had no idea that this type of work was going on behind the scenes at the Natural History Museum. On Friday 23rd September it was our chance to take centre stage in the galleries in Science Uncovered, the largest 'show and tell' the Museum has ever put on.

 

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Using a large plasma screen to bring tiny fossils to life (Photo by Kevin Webb and copyright Natural History Museum)

 

Explaining about microfossils can be a difficult task considering their size and relative unpopularity compared to the dinosaurs and early human fossils that were being displayed on the tables less than 10 metres away. I have previously taken part in science communication events like these and found that microscopes have been a big draw to get the crowds in. This time at Science Uncovered, I found that a large plasma screen showing some eye catching videos and images were more a effective communication tool than ever before. Members of the public were drawn towards the screen to see what I had to say about my subject.

 

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Showing a video of a living ostracod on the giant plasma screen (Photo by Kevin Webb and copyright Natural History Museum)

 

I won't say too much at the moment about what I was talking about other than I was introducing some recent studies on some of our most important ostracod collections. I intend to make that research project the subject of a future blog entitled 'What microfossils tell us about sex in the Cretaceous'.

 

The important theme to this evening was to show the relevance of our collections and research to every day life and showcase to members of the public our science. The ostracods I showed are vital to exploration offshore Brazil and West Africa in areas where oil is being found. Knowledge of the reproductive strategies of ostracods is also vital to interpreting, not just the modern day distribution of ostracods but also the fossil record. Ostracods can give detailed information about past environments (see the Ockley dinosaur blog) and are increasingly being used to interpret past climates.

 

 

A video of the living ostracod Eucypris virens. This is related to the fossil examples that I was showing. (Video courtesy of Dave Horne, Queen Mary College, University of London)

 

It is quite tiring speaking about your subject non-stop for any period of time and my voice was quite dry after an hour. I remember taking part in a similar public event entitled the 'Fossil Road Show' back in the late 1990s and losing my voice completely by the end of the day. Fortunately this time we were using a rota system that changed the staff and specimens on the Palaeontology Station every hour. After my hour was finished I was quite disappointed to be stopping and wished that I could have carried on for longer.

 

Another minor disappointment was that I did not see other aspects of the event and get the chance to fully see what my colleagues from around the museum had to say.

 

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Some scale models of the Cretaceous ostracod Harbinia micropapillosa and my badge.

 

I do have one momento from the event; a badge with 'I'm a scientist.... talk to me'. Guardian journalist Camila Rus joked that some Museum staff had intended to wear their badges on their commute to and from work. I'm not sure this would work considering the almost complete lack of action of fellow passengers when my Natasha wore her 'Please give up your seat, I'm pregnant' badge. What I do know is that large plasma screen was an enormous help to me at 'Science Uncovered' and made my job of explaining my science much easier.

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A couple of weeks ago we processed a loan to Prof. Dil Joseph and his team at the Department of Electrical and Computer Engineering at the University of Alberta, Edmonton, Canada. They have developed a new method for imaging microfossils under a light microscope called Virtual Reflected Light Microscopy (VRLM). As well as being a novel use for some of our historical residue collections, this potentially provides an interactive method for viewing our collections in 3-D on-line and could greatly aid future users of our collections.

 

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Cindy Wong, Adam Harrison and Dr Dileepan Joseph of the University of Alberta (photo courtesy of Ryan Heise, Communications Officer, Department of Electrical and Computer Engineering at the University of Alberta)

 

VLRM involves photographing microfossils under many different light conditions and from many different angles so that 3-D images can be built up. The team has also developed software to deliver these images to the web via an interactive interface that allows users to digitally manipulate specimens. A demo of VLRM can be found on-line and 3-D images can be obtained with the help of red-cyan glasses.

 

In normal circumstances we would make 2 dimensional images of specimens with either a light microscope or with a scanning electron microscope. These would be sent to enquirers about the collections. If possible, scientists would prefer to visit the Museum as they would normally need to manipulate specimens to see features that would not always be visible from 2 dimensional images. VLRM potentially recreates that visitor interaction with the specimens remotely on-line.

 

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Part of the ocean bottom microfossil residue collection housed in the Department of Palaeontology.

 

The team have borrowed some of our most significant microfossil residues to test their system and develop future applications. These residues come mainly from the H.M.S. Challenger Collection. The Challenger Expedition of 1872-1876 was the first oceanographic voyage. Prior to this, the ocean bottom was completely unexplored so these residues represent a 'first ever glimpse' of the bottom of the worlds oceans.

 

All of the organisms discovered during this first dredging of the ocean bottoms, including the microfossils, were described resulting in many new species being found. The foraminiferal type specimens of many of these species are housed here in the Museum and are frequently consulted by visitors. When a new species is described, a type specimen must be designated and deposited in a recognised museum so that future workers can consult them if neccessary.

 

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A type slide from the Challenger Foraminifera Collection. It is 7.5cm long.

 

As the research is being done in North America, it was topical that we also loaned a residue from the Second Albatross Cruise of 1882. The Albatross was reportedly one of the the first vessels built for oceanographic studies and made its maiden voyage from Washington.

 

Dil Joseph's team in Edmonton have already published on computer aided recognition of foraminifera. It will be very interesting to see how historically significant materials from our collections play a part in future research on this subject. Work on Virtual Reflected Light Microscopy certainly looks to revolutionise how data on microfossil collections will be shared and how we make our collections available in the future.

 

Special thanks to Lil Stevens who processed this loan. She has now joined the full time curatorial staff and is helping out with micropalaeontology curation.

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Two upcoming events will enable you to see the original specimens and the scale models of the ostracod that showed evidence of sexual reproduction through the use of giant sperm 140 million years ago.

 

At Science Uncovered on 23 September (see flyer below for details), I'll be on the Palaeontology table from 16.00-17.00. And, a few days before, at 14.30 on 19 September I'll also be taking part in the 'Microscopic sex' talk for Nature Live in the Attenborough Studio in the Darwin Centre.

 

I hope to see you at one or the other (or both!).

 

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Working while I sleep

Posted by Giles Miller Jul 6, 2011

Adding details about our specimens to the Museum electronic database and publishing the details on the internet is an important way for us to make sure that our specimens are used to their best potential. This takes up about 20% of my job allocation. As a result I was very happy to leave the office last night and arrive in the next day to find that 5,634 micropalaeontology records had been added to the collections database overnight while I slept.

 

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Details of the overnight import of records to the Museum database with Pelham Miller on the desktop background.

 

 

If this can be done overnight, is there any need to have a curator to do this job?

 

 

If I'm totally honest, 99% of this work didn't happen overnight. Firstly, someone sat and typed what they saw in our registers as part of the "Rapid Data Project" (thank you SJ). Because the data was recorded often in short hand we had to add information to the records, particularly about where the specimens were published and who donated/collected them (thank you Lyndsey).

 

 

Finally we had to check the records to make sure they were accurate. Part of this was done by using lists of microfossil names already published (thank you Micropalaeontology Press). Checking records is not exactly the most stimulating part of my job. However, I do find that this progresses much faster while I listen to Test Match Special!

 

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An example of a collections register including annotations when our specimens have been published in scientific articles.

 

 

The eagle eyed of you may have spotted on the first image that there were over 2,000 errors in the overnight import. This looks serious but they are easy to correct. To maintain data accuracy and consistency across the Museum, the database system (KE Emu) only allows certain terms to be used for some fields. I used "Purchased" instead of "Purchase" and this caused about a thousand of them. The rest of the errors result from incorrect usage of some country names in the Middle East ...

 

 

In the last year we have added about 35,000 micropalaeontological records. I am also managing projects to create records with other Palaeontology Curators. This is on-going and we hope to reach 100,000 records in the next couple of years.

 

 

OK. So you now know that this didn’t really happen overnight while I slept. Even so, it does give a good example of what can be achieved with a little bit of teamwork. If you consider that each curator in our department has an annual target of about 2,000 specimens to add to our on-line database, this project has enormous potential to showcase our collections quickly, easily and accurately.